Rename product from agent-framework to automaton; move scripts to scripts/ folder

prompts/onboarding.md

@@ -98,7 +98,7 @@ Do not begin any research, implementation, or bug-finding tasks.
 
 ## Project Upgrade
 
-When a user asks to "upgrade the agent-framework for this project," the agent should:
+When a user asks to "upgrade automaton for this project," the agent should:
 
 ### Upgrade Process
 
@@ -129,25 +129,25 @@ The agent should report:
 ### Example Upgrade Scenarios
 
 **Scenario 1: New file added globally**
-- User says: "Upgrade the agent-framework for this project"
+- User says: "Upgrade automaton for this project"
 - Agent detects that `prompts/test_design.md` is missing from the project's framework
 - Agent copies `prompts/test_design.md` from the global framework into the project's framework
 - Agent reports: "Upgraded: Added prompts/test_design.md. Your framework is now up to date."
 
 **Scenario 2: Global file changed, project hasn't customized it**
-- User says: "Upgrade the agent-framework for this project"
+- User says: "Upgrade automaton for this project"
 - Agent detects that `prompts/orchestrate.md` has changed in the global framework, and the project's version is identical to the old global version
 - Agent copies `prompts/orchestrate.md` from the global framework into the project's framework
 - Agent reports: "Upgraded: Updated prompts/orchestrate.md. Your framework is now up to date."
 
 **Scenario 3: Global file changed, project has customized it**
-- User says: "Upgrade the agent-framework for this project"
+- User says: "Upgrade automaton for this project"
 - Agent detects that `prompts/orchestrate.md` has changed in the global framework, and the project's version differs from the global version
 - Agent keeps the project's version of `prompts/orchestrate.md`
 - Agent reports: "Skipped: prompts/orchestrate.md (customized in your project). Your framework is now up to date."
 
 **Scenario 4: Multiple changes**
-- User says: "Upgrade the agent-framework for this project"
+- User says: "Upgrade automaton for this project"
 - Agent detects:
   - `prompts/test_design.md` is new → **Added**
   - `prompts/workflow.md` has changed, project hasn't customized → **Upgraded**

prompts/workflow.md

@@ -1,6 +1,6 @@
 # Workflow State Machine
 
-This file defines the linear progression of a task in the agent-framework. The Orchestrator uses this to determine the next phase.
+This file defines the linear progression of a task in automaton. The Orchestrator uses this to determine the next phase.
 
 ## Task Lifecycle