Fix 11 automation gaps: dead-end phases, autopilot runtime, guard plugin, status.py bugs, Category 3 audit
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- Fix decomposition:approved and human_intervention dead-end phases - Add scripts/autopilot.py: real drive_all() implementation - Fix guard plugin: throw Error instead of injecting user messages - Fix status.py: double continue, _require_state, --list-states - Add Category 3 (git-based modification) audit - Add Category 5 (stuck-task detection) audit - All 206 tests pass
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# Implement Category 3 Audit (Git-Based Modification Detection)
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## Problem
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Category 3 audit (status.py:698-702) is stubbed out with "future work". The framework cannot detect unauthorized modifications.
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## Fix
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Implement git-based modification checking:
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1. Check git diff for uncommitted changes to files outside task folders
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2. Check `git log --diff-filter=M --name-only` for recent modifications not associated with open tasks
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3. Flag files modified when no task is in implement/doc_review phase
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4. Report violations with file paths and suggested action
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## Verification
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- `status.py --audit` includes Category 3 findings
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- Detects unauthorized modifications
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- Separates false positives (framework files, config files)
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